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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74557979_74558942_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
74557979 - 74558942
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACA|GCTAGATTC
5'SS Class:
weak_major
3'SS Sequence:
TTGGTATTCTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAA
U12 Branch Point Sequence:
AGACTTGCAAAT
Flanking Amino Acid:
VIGSGCNLDTFAYCYPVIQG
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50
0
1.5
56.9
44.9
Major BPS
63.3
0.33
1.2
55.1
42.1
Major PPT
64.8
0.33
1.1
68.3
41.6
Minor 5ss
30.7
-2.2
4
49.3
40.7
Minor BPS
38.6
-0.7
2
50.78
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016403
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032378
74557874 - 74565257
7384