Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74559026_74561163_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

74559026 - 74561163

Intron Length:

2138

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGACAG

5'SS Class:

strong_major

3'SS Sequence:

CTCTTCTTTTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATACAT

U12 Branch Point Sequence:

GTTTCATTTACT

Flanking Amino Acid:

NCTILVVSNPVDILTYVTWK

Intron Amino Acid Position:

140

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.7

0.91

0.9

71.6

40.1

Major BPS

74.9

0.62

81.3

29.9

Major PPT

85.3

0.79

0.6

84.4

23.6

Minor 5ss

31.3

-2.1

3.1

38.3

46.6

Minor BPS

66.5

0.6

1.9

86.74

38.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016403

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032378

74557874 - 74565257

7384

ENSAPLT00000027868

74554331 - 74565257

10927

ENSAPLT00000017126

74555539 - 74565257

9719