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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74561338_74561806_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74561338 - 74561806
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAACCTA
5'SS Class:
major
3'SS Sequence:
TGCTTGATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TTAGTGATAATT
Flanking Amino Acid:
LQTHKIVADKDYAVTANSKI
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
67.4
39.7
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
76.3
0.59
1
69.7
40.3
Minor 5ss
35.4
-1.7
3.2
47
48.3
Minor BPS
45.8
-0.2
2.3
68.84
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016403
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032378
74557874 - 74565257
7384
ENSAPLT00000027868
74554331 - 74565257
10927
ENSAPLT00000017126
74555539 - 74565257
9719