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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74561925_74565131_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74561925 - 74565131
Intron Length:
3207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTGC
5'SS Class:
major
3'SS Sequence:
TTTATTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCCTTTTAAAT
Flanking Amino Acid:
MACAVSILGKGLCDELALVD
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65
42.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90.5
0.91
0.7
89.1
27.7
Minor 5ss
36
-1.6
3.5
50.3
46.3
Minor BPS
65.1
0.55
1.4
77.95
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016403
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032378
74557874 - 74565257
7384
ENSAPLT00000027868
74554331 - 74565257
10927
ENSAPLT00000017126
74555539 - 74565257
9719