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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74652367_74654192_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74652367 - 74654192
Intron Length:
1826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
CTTTCCTTCACC
Flanking Amino Acid:
FADRTVVTIAHRVSHILDAN
Intron Amino Acid Position:
1491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
91.2
27.5
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
94.1
0.99
0.6
87.9
29.5
Minor 5ss
42.1
-0.9
2.9
61.3
43
Minor BPS
74.6
0.76
1.7
82.21
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454