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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74654769_74655447_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74654769 - 74655447
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTCCA
5'SS Class:
major
3'SS Sequence:
GATTTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCAACTTAATT
Flanking Amino Acid:
NMVKSLPGGLDAMVTEGGEN
Intron Amino Acid Position:
1425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
66
39.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.3
0.68
0.9
73.6
40.3
Minor 5ss
40.7
-1
2.7
47.8
43
Minor BPS
68.4
0.66
1.5
81.74
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454