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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74655896_74658828_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74655896 - 74658828
Intron Length:
2933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTAGTTTT
5'SS Class:
major
3'SS Sequence:
CTGTTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAA
U12 Branch Point Sequence:
CTGTTTTAAACA
Flanking Amino Acid:
AFFRMVDIFDGRIVIDGIDI
Intron Amino Acid Position:
1354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
81.7
32.3
Major BPS
69.5
0.49
1.2
63.7
43.9
Major PPT
72.8
0.51
1
69.8
39.5
Minor 5ss
42.6
-0.8
2.8
57.1
41.4
Minor BPS
57.3
0.22
1.7
65.7
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454