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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74658908_74660321_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74658908 - 74660321
Intron Length:
1414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTAT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ACATCTTTACAT
Flanking Amino Acid:
VKAYIKPGQKVGICGRTGSG
Intron Amino Acid Position:
1328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
68.7
38.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
37.4
-1.4
3.5
55.6
48.6
Minor BPS
54
0.2
1.7
68.14
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454