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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74660453_74661509_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74660453 - 74661509
Intron Length:
1057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATTGCAC
5'SS Class:
major
3'SS Sequence:
GTGACTATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTTGTTTTATT
Flanking Amino Acid:
MESENYDGYLDSSQVPKDWP
Intron Amino Acid Position:
1284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.3
0.24
1.1
49.4
41.2
Major BPS
84
0.85
0.9
75
39.9
Major PPT
69.4
0.44
1
59
46
Minor 5ss
36.8
-1.5
3.2
41.7
45.2
Minor BPS
59.2
0.37
2
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454