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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74666878_74669593_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74666878 - 74669593
Intron Length:
2716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTAAA
5'SS Class:
major
3'SS Sequence:
TTGCTCTCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGTAATATAACA
Flanking Amino Acid:
AEGLTTIRAFRHEARFKQRM
Intron Amino Acid Position:
1175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.3
75.9
35.2
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
72.8
0.51
1
69.7
36.7
Minor 5ss
36.5
-1.5
2.5
42.3
44.5
Minor BPS
50.8
0.02
1.8
67.26
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454