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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74669687_74672355_R

Intron Information:

Intron Rank:
27
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
74669687 - 74672355
Intron Length:
2669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGCATT
5'SS Class:
weak_major
3'SS Sequence:
TTCTCTGCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
GATGTAATAGCT
Flanking Amino Acid:
FIQKYFRVASKDLQELDDST
Intron Amino Acid Position:
1144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
77.2
37.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
81.1
0.7
0.8
73.1
37.3
Minor 5ss
61
0.37
2.4
75.1
34.5
Minor BPS
42
-0.5
2
60.02
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454