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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74672514_74673363_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74672514 - 74673363
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACATA
5'SS Class:
major
3'SS Sequence:
CTATTTGCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
GTTTTTCTATTT
Flanking Amino Acid:
FSADTNIIDQHIPPTLESLT
Intron Amino Acid Position:
1092

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
73
37.8
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
75.4
0.57
0.9
73.8
36.7
Minor 5ss
48.4
-0.1
2.7
65.8
45.4
Minor BPS
49.5
0.05
1.9
72.55
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454