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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74674381_74675414_R

Intron Information:

Intron Rank:
24
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
74674381 - 74675414
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCTAAGAGC
5'SS Class:
weak_major
3'SS Sequence:
GTCATTTTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TGTCATTTTATT
Flanking Amino Acid:
NENELRNADDTYHVAVFSIL
Intron Amino Acid Position:
1019

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.8
0.09
1.4
61
40.4
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
70.7
0.47
0.9
70.4
39.9
Minor 5ss
20.4
-3.4
3.7
30.9
35.5
Minor BPS
49.8
0.06
1.8
71.17
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454