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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74679957_74681337_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74679957 - 74681337
Intron Length:
1381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATAAC
5'SS Class:
major
3'SS Sequence:
TTATATTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTTCTGATCC
Flanking Amino Acid:
FGDQTEIGERGINLSGGQRQ
Intron Amino Acid Position:
795

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
74.7
35.6
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
71.7
0.49
0.9
71.8
38.7
Minor 5ss
34.9
-1.7
2.8
36.9
40.6
Minor BPS
59.8
0.29
1.7
72.29
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454