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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74681423_74682861_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74681423 - 74682861
Intron Length:
1439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
ATTGGTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAA
U12 Branch Point Sequence:
ATTGCAATGACC
Flanking Amino Acid:
IIFGSPFNKQRYKAVTDACS
Intron Amino Acid Position:
766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.2
33.9
Major BPS
54
0.1
1.1
61.6
34.2
Major PPT
79.9
0.67
0.9
72.7
41.8
Minor 5ss
38.7
-1.3
2.9
50.6
45.9
Minor BPS
48.6
-0.1
2
66.51
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454