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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74684567_74688718_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74684567 - 74688718
Intron Length:
4152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
CCATAACTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTACCATAACT
Flanking Amino Acid:
QTLEGKVHWSNVNETEPSFE
Intron Amino Acid Position:
719

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
80.7
31.7
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
70.1
0.45
1
61.5
38.6
Minor 5ss
48.1
-0.2
2.4
63.2
35.1
Minor BPS
76.5
0.91
1.6
94.33
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454