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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74688825_74690437_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74688825 - 74690437
Intron Length:
1613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATAA
5'SS Class:
strong_major
3'SS Sequence:
GTTATTATCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTGTTTTAATG
Flanking Amino Acid:
LSNINIRIPTGQMTMIVGQV
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
75.7
29.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71.6
0.49
0.9
66
39.6
Minor 5ss
43.3
-0.7
2.8
55.5
48.7
Minor BPS
67.4
0.41
1.4
69.97
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454