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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_7469067_7469811_R

Intron Information:

Intron Rank:
147174
Intron Class:
major
Intron Phase:
Intron Coordinates:
7469067 - 7469811
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGAGAA
5'SS Class:
major
3'SS Sequence:
TTTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCCCTCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
64.2
35.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92
0.95
0.7
84.8
35.4
Minor 5ss
28.8
-2.4
3.5
34.7
43.7
Minor BPS
62.7
0.48
2
86.08
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026495
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044344
7468581 - 7512180
43600
ENSAPLT00000037709
7468581 - 7470793
2213