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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74691542_74692768_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74691542 - 74692768
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
CCTCACTGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTCTCTTCACCT
Flanking Amino Acid:
YESCKKHTGLHTKAINRRQP
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.2
33.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
67.7
0.4
0.9
65.2
35.9
Minor 5ss
45.4
-0.5
2.8
65.7
39.3
Minor BPS
59.6
0.38
1.9
79.65
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454