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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74692878_74695588_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74692878 - 74695588
Intron Length:
2711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TCGTTTGTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGTT
U12 Branch Point Sequence:
CGTTTGTTTAAG
Flanking Amino Acid:
VVRFAVKAIVSVQKLNEFLL
Intron Amino Acid Position:
586

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.9
81.8
38.5
Major BPS
38.1
-0.7
4.3
71.4
45.1
Major PPT
70.8
0.47
1.1
74.9
39
Minor 5ss
41.1
-1
2.9
57.9
46.4
Minor BPS
41.8
-0.7
2.4
48.42
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454