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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74695770_74697314_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
74695770 - 74697314
Intron Length:
1545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTGTTTTCAAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTGTTTTCAAGA
Flanking Amino Acid:
KTFALHTSLSTFILICSPLQ
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
58.6
0.19
1.7
70
40.3
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
52.8
0.08
1.8
66.45
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454