About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74703404_74706534_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74703404 - 74706534
Intron Length:
3131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACACGA
5'SS Class:
major
3'SS Sequence:
TTTTCAGTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTCCTTTTATT
Flanking Amino Acid:
TTNNTNTTEKDPSNSYLSSE
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
62.6
43.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
67.2
0.39
1.1
67.5
37.2
Minor 5ss
36.9
-1.5
3.1
48.7
46.8
Minor BPS
67.9
0.65
1.6
85.32
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454