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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74706730_74712147_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74706730 - 74712147
Intron Length:
5418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCAGA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAC
U12 Branch Point Sequence:
GGTGCATTGACA
Flanking Amino Acid:
CLKEAYEEQKKKVADQPNRS
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
68.9
43.8
Major BPS
66.4
0.41
1
58.7
38.1
Major PPT
87.7
0.85
0.8
80.2
37.3
Minor 5ss
44.3
-0.6
2.7
58.2
46
Minor BPS
55
0.15
1.8
65.46
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454