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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74712391_74713043_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74712391 - 74713043
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTGAT
5'SS Class:
major
3'SS Sequence:
ATCTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTTTATTATCT
Flanking Amino Acid:
AVEINVIRVRRYVFFMNPQK
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74
36.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
85.3
0.79
0.8
77.2
36.5
Minor 5ss
40
-1.1
3.2
48.8
47.3
Minor BPS
60.7
0.41
1.9
81.71
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454