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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74713211_74714302_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74713211 - 74714302
Intron Length:
1092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ACCTGTTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TATTTTATAATG
Flanking Amino Acid:
ETSNFPKLLLALFLYWVMAF
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
78.6
0.64
0.9
71.7
37.7
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
58.1
0.12
1.6
64.77
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454