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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74714425_74714790_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74714425 - 74714790
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
CATTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
GATTCACTAACT
Flanking Amino Acid:
CEIAEGIVSDTQMKSRHLHL
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.3
75.8
34.3
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
84.3
0.77
0.8
81.4
34.8
Minor 5ss
34.4
-1.8
3.2
42.7
38
Minor BPS
60.1
0.4
2
80.78
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017164
74652229 - 74717682
65454