About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74743724_74745801_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74743724 - 74745801
Intron Length:
2078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGCATG
5'SS Class:
major
3'SS Sequence:
TGTCTGCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TAATCATTCATT
Flanking Amino Acid:
RAALDAGVFHSVWVSTDHDE
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.9
43.5
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
68.6
0.42
1
62.6
38.6
Minor 5ss
36.5
-1.5
3.2
47.9
47.8
Minor BPS
54.4
0.22
2
75.44
41

Associated Gene:

Gene:
CMAS
Ensembl Gene ID:
ENSAPLG00000016908
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028308
74743563 - 74755719
12157