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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74746304_74748844_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74746304 - 74748844
Intron Length:
2541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TGTCTGTTAACA
Flanking Amino Acid:
QFRWSEVKKGENKMTEPQNL
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
74.2
0.54
1
69.2
40.7
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
58.9
0.28
2.1
73.25
38.4

Associated Gene:

Gene:
CMAS
Ensembl Gene ID:
ENSAPLG00000016908
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028308
74743563 - 74755719
12157