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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74748979_74750253_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74748979 - 74750253
Intron Length:
1275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTATTTTATCT
Flanking Amino Acid:
RHLIEKGYLQGGKMAYYEMR
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
80
33
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.3
0.59
0.9
70.2
40.3
Minor 5ss
31.7
-2.1
3
42.5
44.2
Minor BPS
59.5
0.38
1.6
75.61
41.6

Associated Gene:

Gene:
CMAS
Ensembl Gene ID:
ENSAPLG00000016908
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028308
74743563 - 74755719
12157