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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74751299_74753451_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74751299 - 74753451
Intron Length:
2153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CTTTATTTAATA
Flanking Amino Acid:
INLLKKRGIEVRLISERDCS
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
76.7
0.6
0.9
73.6
35.4
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
69.2
0.6
1.4
75.77
36

Associated Gene:

Gene:
CMAS
Ensembl Gene ID:
ENSAPLG00000016908
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028308
74743563 - 74755719
12157