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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74772024_74774884_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74772024 - 74774884
Intron Length:
2861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTATATGAATT
Flanking Amino Acid:
AFFDLFLEGDVVCGSWFDHF
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
79.1
36.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
90.7
0.92
0.7
88.7
28.3
Minor 5ss
36.3
-1.5
3.3
49.4
46.6
Minor BPS
56.4
0.28
1.7
78.71
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002767
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002797
74768591 - 74777158
8568