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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_74880325_74932362_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74880325 - 74932362
Intron Length:
52038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAGC
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
GTGTTATCAACA
Flanking Amino Acid:
VTANPSIIQKRFQNLLWSRK
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69
38.8
Major BPS
79
0.72
1
80.3
31.7
Major PPT
88.7
0.87
0.7
83.2
31.9
Minor 5ss
31.2
-2.1
3.4
42.5
44.6
Minor BPS
52.2
0.07
1.8
65.44
40.6

Associated Gene:

Gene:
ST8SIA1
Ensembl Gene ID:
ENSAPLG00000023759
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032403
74879838 - 75010360
130523