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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_75030883_75031725_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75030883 - 75031725
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGCGGC
5'SS Class:
major
3'SS Sequence:
TTCATCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTTTCATCT
Flanking Amino Acid:
QTIRRGSIKTTASLDKASPL
Intron Amino Acid Position:
897

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.1
58
41
Major BPS
100
1.24
0.5
100
0
Major PPT
82.5
0.73
0.7
81.1
30.8
Minor 5ss
37
-1.5
3.6
49
42
Minor BPS
54.8
0.23
1.8
75.13
42.3

Associated Gene:

Gene:
C2CD5
Ensembl Gene ID:
ENSAPLG00000002815
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030608
75028749 - 75096097
67349
ENSAPLT00000002896
75028749 - 75096097
67349