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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_75032860_75037875_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75032860 - 75037875
Intron Length:
5016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTTAA
5'SS Class:
major
3'SS Sequence:
TTTATTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTAATA
Flanking Amino Acid:
LASQPFSPAKEVLEGASSHT
Intron Amino Acid Position:
846

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.2
72.3
35.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.1
0.68
0.9
77.7
35.3
Minor 5ss
34.5
-1.8
2.9
40.7
45.6
Minor BPS
73.5
0.73
1.1
79.23
30.7

Associated Gene:

Gene:
C2CD5
Ensembl Gene ID:
ENSAPLG00000002815
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002896
75028749 - 75096097
67349
ENSAPLT00000030608
75028749 - 75096097
67349