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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_75039174_75039943_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75039174 - 75039943
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TATTTCTGATTT
Flanking Amino Acid:
VALPEDEIVQIAVTAVAITF
Intron Amino Acid Position:
788

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
83
0.74
0.8
77.1
36.1
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
58.9
0.36
1.7
77.68
38.9

Associated Gene:

Gene:
C2CD5
Ensembl Gene ID:
ENSAPLG00000002815
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030608
75028749 - 75096097
67349
ENSAPLT00000002896
75028749 - 75096097
67349