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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_75070911_75076556_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75070911 - 75076556
Intron Length:
5646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTACTCACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTTTTTTACTC
Flanking Amino Acid:
QQTQSALEQREFPFFTLTAF
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.6
42.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
68.8
0.42
1
63.8
36.6
Minor 5ss
32
-2.1
3.4
39.2
46.1
Minor BPS
67
0.51
1.5
77
33.7

Associated Gene:

Gene:
C2CD5
Ensembl Gene ID:
ENSAPLG00000002815
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030608
75028749 - 75096097
67349
ENSAPLT00000002896
75028749 - 75096097
67349