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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_75076643_75082205_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75076643 - 75082205
Intron Length:
5563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGCGC
5'SS Class:
major
3'SS Sequence:
TGGTACTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTCTTTTGAAT
Flanking Amino Acid:
DTDLSLTPKTGMGSGSAGKE
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.5
44.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74.4
0.55
0.9
70.3
41
Minor 5ss
31.2
-2.1
3.3
38.8
40.9
Minor BPS
63.8
0.52
1.4
81.08
34.1

Associated Gene:

Gene:
C2CD5
Ensembl Gene ID:
ENSAPLG00000002815
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002896
75028749 - 75096097
67349