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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_75076643_75083335_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75076643 - 75083335
Intron Length:
6693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGAGAC
5'SS Class:
major
3'SS Sequence:
TGGTACTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTCTTTTGAAT
Flanking Amino Acid:
SVSVPTLIYTGMGSGSAGKE
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
62.4
36.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74.4
0.55
0.9
70.3
41
Minor 5ss
29.8
-2.3
3.5
37.7
42.5
Minor BPS
63.8
0.52
1.4
81.08
34.1

Associated Gene:

Gene:
C2CD5
Ensembl Gene ID:
ENSAPLG00000002815
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030608
75028749 - 75096097
67349