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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_75082358_75084936_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75082358 - 75084936
Intron Length:
2579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
CTTCTTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
GATTACTGAATG
Flanking Amino Acid:
ACNSPSKEMKEIPFNEDPNP
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.5
40.6
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
79.3
0.66
0.9
76.6
32
Minor 5ss
40.6
-1
2.8
48.1
41.6
Minor BPS
54.4
0
1.7
59.86
41.4

Associated Gene:

Gene:
C2CD5
Ensembl Gene ID:
ENSAPLG00000002815
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002896
75028749 - 75096097
67349