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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_75087491_75087951_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75087491 - 75087951
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTCTTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTAACA
Flanking Amino Acid:
QSSCGVKFFCTTSIPKCYRA
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.6
0.82
0.8
84.3
29.1
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
79.4
0.92
1
82.25
33.1

Associated Gene:

Gene:
C2CD5
Ensembl Gene ID:
ENSAPLG00000002815
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030608
75028749 - 75096097
67349
ENSAPLT00000002896
75028749 - 75096097
67349