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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_75128880_75129679_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75128880 - 75129679
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTCTTTTAAG
Flanking Amino Acid:
PEHVCNPDIFRLIAKQLAKI
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.2
33.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
85.6
0.8
0.9
91.1
21.3
Minor 5ss
49.1
-0.1
3
73.2
43.7
Minor BPS
62.7
0.26
1.8
72.54
40

Associated Gene:

Gene:
ETNK1
Ensembl Gene ID:
ENSAPLG00000003084
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028721
75118167 - 75144184
26018
ENSAPLT00000003146
75118167 - 75146544
28378