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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_75143160_75144841_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75143160 - 75144841
Intron Length:
1682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TAATCTTTACCT
Flanking Amino Acid:
LYVQVNQFALASHFFWGLWA
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
76.5
32.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.3
0.82
0.6
85.6
21.7
Minor 5ss
35.5
-1.6
2.8
42
39.2
Minor BPS
69
0.68
1.6
81.94
39.4

Associated Gene:

Gene:
ETNK1
Ensembl Gene ID:
ENSAPLG00000003084
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003146
75118167 - 75146544
28378