About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_75438217_75453757_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75438217 - 75453757
Intron Length:
15541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTTTCCTGATCC
Flanking Amino Acid:
LGLNNCRTEKDKTSLETLTQ
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
80.7
33.6
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
71.6
0.49
0.8
65.9
29.1
Minor 5ss
32.7
-2
3.2
43.9
43.8
Minor BPS
70.6
0.63
1.7
83.6
35.6

Associated Gene:

Gene:
SOX5
Ensembl Gene ID:
ENSAPLG00000003238
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003302
75426766 - 75680004
253239