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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_75453931_75458743_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75453931 - 75458743
Intron Length:
4813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TTTCTTGTAACT
Flanking Amino Acid:
ASPSARANTIDILSSITSSG
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.7
33.5
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
84.3
0.77
0.9
90.2
22.9
Minor 5ss
44.1
-0.6
2.8
56.9
47.3
Minor BPS
61.5
0.44
2
84.55
36.3

Associated Gene:

Gene:
SOX5
Ensembl Gene ID:
ENSAPLG00000003238
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003302
75426766 - 75680004
253239