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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_75481697_75511246_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75481697 - 75511246
Intron Length:
29550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTATTTTTACA
Flanking Amino Acid:
TPGLGPLQLQQLYAAQLAAM
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
75.3
40.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
92.4
0.95
0.7
87.7
29.7
Minor 5ss
34.5
-1.8
2.8
42.1
44.5
Minor BPS
62.2
0.38
1.6
75.3
35.7

Associated Gene:

Gene:
SOX5
Ensembl Gene ID:
ENSAPLG00000003238
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003302
75426766 - 75680004
253239