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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_75569579_75572006_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75569579 - 75572006
Intron Length:
2428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGAT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
ACTTTCTCCACA
Flanking Amino Acid:
MELAKQQQEQIARQQQQLLQ
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.9
27.7
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
78.7
0.65
0.8
72.8
31.4
Minor 5ss
28.3
-2.5
3.3
39.6
46.4
Minor BPS
50.4
0.01
2
65.27
41.4

Associated Gene:

Gene:
SOX5
Ensembl Gene ID:
ENSAPLG00000003238
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003302
75426766 - 75680004
253239