Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_75645577_75678776_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

75645577 - 75678776

Intron Length:

33200

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGTTTG

5'SS Class:

major

3'SS Sequence:

TCTCTTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAAGAA

U12 Branch Point Sequence:

TTCAGCTCATTT

Flanking Amino Acid:

RTPTSQHNTMEVDGNKVMSS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

71.5

41.1

Major BPS

58.2

0.21

1.1

55.4

40.4

Major PPT

89.9

0.9

0.6

88.2

21.5

Minor 5ss

42.6

-0.8

3.1

54.1

44.6

Minor BPS

44.5

-0.3

2.1

64.55

46.2

Associated Gene:

Gene:

SOX5

Ensembl Gene ID:

ENSAPLG00000003238

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003302

75426766 - 75680004

253239