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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_75679009_75679993_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
75679009 - 75679993
Intron Length:
985

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAT|GCCTGGTTT
5'SS Class:
weak_major
3'SS Sequence:
TTGTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATTATTT
Flanking Amino Acid:
FSVMMSSKRPASP
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.4
62.3
42.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
85.7
0.8
0.8
77.7
36.7
Minor 5ss
36.3
-1.6
4.3
59.9
45.1
Minor BPS
62.4
0.47
1.9
82.13
39.2

Associated Gene:

Gene:
SOX5
Ensembl Gene ID:
ENSAPLG00000003238
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003302
75426766 - 75680004
253239