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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_75923211_75984907_R

Intron Information:

Intron Rank:
147723
Intron Class:
major
Intron Phase:
Intron Coordinates:
75923211 - 75984907
Intron Length:
61697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
ATGTCATGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
80.5
34.9
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
89.3
0.88
0.7
84.9
29.9
Minor 5ss
44
-0.7
2.8
55.1
43.4
Minor BPS
50.3
0.09
2
72.69
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026817
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031083
75922939 - 75992017
69079