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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_75985126_75991801_R

Intron Information:

Intron Rank:
147724
Intron Class:
major
Intron Phase:
Intron Coordinates:
75985126 - 75991801
Intron Length:
6676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCATTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
CTGTCCTGACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
69.4
0.44
1
70
33.9
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
55.6
0.26
1.8
72.28
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026817
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031083
75922939 - 75992017
69079